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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
102
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
102
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
91
August, 2017
18
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
518
bam
499
bigWig
463
tsv
59
fastq
36
bed narrowPeak
22
tagAlign
9
bed bed3+
8
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
605
Homo sapiens
Biosample type
530
tissue
75
in vitro differentiated cells
primary cell
1
stem cell
Organ
606
connective tissue
pancreas
472
adipose tissue
439
liver
364
heart
310
kidney
265
brain
192
blood vessel
192
vasculature
158
bone element
134
artery
122
limb
114
epithelium
82
musculature of body
56
eye
43
nerve
34
embryo
20
lung
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
606
AMP
Genome assembly (visualization)
516
hg19
495
GRCh38
Lab
602
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
target.investigated_as!
transcription factor
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
606 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
2
1
+ See 3 more…
in vitro differentiated cells
adipocyte
5
45
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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