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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
DNase-seq
4
ATAC-seq
1
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
transcription factor
1
control
Date released
6
June, 2019
4
February, 2023
1
August, 2017
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
553
bam
528
bigWig
478
tsv
62
fastq
50
bed narrowPeak
22
bigBed narrowPeak
22
tagAlign
15
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
15
Homo sapiens
Biosample type
8
primary cell
5
in vitro differentiated cells
2
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
22
pancreas
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
15
AMP
Genome assembly (visualization)
14
hg19
9
GRCh38
Lab
15
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
transcription factor
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
15 results
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DNase-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
preadipocyte
1
tissue
omental fat pad
2
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