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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
57
ChIP-seq
10
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
76
Transcription
57
DNA binding
17
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
24
broad histone mark
transcription factor
21
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
69
February, 2021
46
August, 2017
16
June, 2019
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
2
May, 2021
1
March, 2020
Available data
128
bam
122
bigWig
77
tsv
44
bed narrowPeak
35
fastq
17
bigBed narrowPeak
14
tagAlign
11
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
4
bed bedgraph
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
157
Homo sapiens
Biosample type
61
in vitro differentiated cells
59
tissue
36
primary cell
1
stem cell
Organ
871
pancreas
630
connective tissue
adipose tissue
463
epithelium
453
liver
344
kidney
340
heart
282
brain
192
vasculature
187
blood vessel
151
bone element
122
limb
101
artery
96
musculature of body
43
nerve
34
embryo
29
eye
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
1
T1D
Genome assembly (visualization)
131
hg19
119
GRCh38
Lab
152
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
target.investigated_as!
transcription factor
month_released!
February, 2023
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
4
45
7
1
1
osteoblast
1
1
cardiac fibroblast
1
tissue
bone tissue
58
islet of Langerhans
1
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
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stem cell
mesenchymal stem cell
1
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