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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
32
DNase-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
219
DNA binding
47
DNA accessibility
33
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
191
histone
191
histone modification
121
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
90
October, 2019
88
November, 2017
30
June, 2019
28
May, 2019
19
April, 2020
18
July, 2019
16
October, 2017
12
February, 2020
4
March, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
28
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
307
Homo sapiens
Biosample type
290
tissue
18
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
289
AMP
19
LungMap
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
289
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
lung
9
10
1
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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