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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
2
DNase-seq
2
pCHi-C
1
ATAC-seq
Assay category
39
DNA binding
14
Transcription
13
DNA accessibility
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
11
control
Date released
46
October, 2019
19
April, 2020
2
March, 2020
1
February, 2020
Available data
42
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
7
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
67
Homo sapiens
Biosample type
68
tissue
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
19
LungMap
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
49
AMP-T2D consortium
19
Xin Sun, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
tissue
tibial nerve
35
5
2
1
lung
10
9
1
islet of Langerhans
4
ovary
1
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