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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
193
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
355
bam
289
bigWig
172
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
450
Homo sapiens
Biosample type
321
tissue
102
cell line
14
primary cell
13
in vitro differentiated cells
Organ
926
pancreas
639
connective tissue
515
epithelium
472
adipose tissue
450
liver
342
kidney
338
heart
281
brain
226
vasculature
221
blood vessel
158
bone element
136
artery
122
limb
95
musculature of body
56
eye
43
nerve
34
embryo
22
vein
19
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
450
AMP
Genome assembly (visualization)
295
hg19
245
GRCh38
Lab
390
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
transcription factor
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
450 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
3
1
1
1
1
right lobe of liver
8
3
1
2
1
2
cell line
HepG2
81
14
1
1
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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