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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
112
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
112
DNA binding
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
167
May, 2020
59
November, 2017
40
May, 2022
18
August, 2017
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
276
bam
207
bigWig
174
tsv
94
fastq
32
bed narrowPeak
28
tagAlign
9
bigBed narrowPeak
8
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
351
Homo sapiens
Biosample type
253
tissue
86
cell line
11
primary cell
1
in vitro differentiated cells
Organ
776
pancreas
566
connective tissue
442
adipose tissue
422
epithelium
351
liver
314
kidney
279
heart
159
bone element
156
vasculature
152
blood vessel
116
artery
96
brain
73
limb
63
musculature of body
57
eye
22
embryo
20
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
16
skeleton
13
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
351
AMP
Genome assembly (visualization)
214
hg19
176
GRCh38
Lab
294
AMP-T2D consortium
40
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
target.investigated_as!
transcription factor
histone
BIOSAMPLE
ASSAY
351 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
44
20
2
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
2
cell line
HepG2
14
63
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
1
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