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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
112
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
Transcription
112
DNA binding
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
167
May, 2020
59
November, 2017
40
May, 2022
18
August, 2017
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
275
bam
206
bigWig
172
tsv
94
fastq
32
bed narrowPeak
28
tagAlign
9
bigBed narrowPeak
8
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
348
Homo sapiens
Biosample type
250
tissue
86
cell line
11
primary cell
1
in vitro differentiated cells
Organ
765
pancreas
564
connective tissue
441
adipose tissue
417
epithelium
348
liver
312
kidney
272
heart
159
bone element
152
vasculature
148
blood vessel
116
artery
94
brain
73
limb
58
musculature of body
57
eye
22
embryo
19
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
16
skeleton
12
spleen
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
348
AMP
Genome assembly (visualization)
212
hg19
175
GRCh38
Lab
291
AMP-T2D consortium
40
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
target.investigated_as!
transcription factor
histone
month_released!
March, 2020
BIOSAMPLE
ASSAY
348 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
44
20
2
3
1
1
1
right lobe of liver
3
3
1
2
1
2
cell line
HepG2
14
63
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
1
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