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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
30
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
30
DNA binding
4
DNA accessibility
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
transcription factor
1
RNA binding protein
Date released
54
February, 2021
26
October, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
87
bam
78
bigWig
58
tsv
24
bed narrowPeak
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
92
Homo sapiens
Biosample type
54
cell line
36
tissue
2
primary cell
Organ
775
pancreas
619
connective tissue
468
adipose tissue
430
liver
412
epithelium
329
heart
279
brain
269
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
musculature of body
91
artery
42
nerve
34
embryo
32
eye
22
vein
20
lung
18
spleen
18
ureter
17
blood
17
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
78
GRCh38
78
hg19
Lab
92
AMP-T2D consortium
target.investigated_as!
transcription factor
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
2
tissue
tibial artery
1
23
2
coronary artery
1
4
2
pulmonary artery
2
islet of Langerhans
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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