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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
29
ATAC-seq
24
total RNA-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
39
DNA binding
35
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
transcription factor
Date released
63
October, 2019
31
February, 2023
6
June, 2019
2
February, 2020
1
July, 2019
Available data
59
bed narrowPeak
48
bam
36
bigWig
31
bigBed narrowPeak
10
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
103
Homo sapiens
Biosample type
99
tissue
4
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
64
hg19
36
GRCh38
Lab
103
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
5
2
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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