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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
14
DNA binding
3
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
January, 2019
6
November, 2018
4
December, 2018
2
July, 2019
1
March, 2020
1
October, 2017
Available data
19
bam
18
fastq
11
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
20
tissue
1
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
11
GRCh38
10
hg19
Lab
21
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RRBS
pCHi-C
total RNA-seq
tissue
spleen
14
2
1
1
1
pericardium
1
primary cell
pericardium fibroblast
1
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