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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
3
ChIP-seq
Assay category
21
DNA accessibility
4
Transcription
3
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
February, 2021
8
February, 2023
8
January, 2021
2
December, 2018
1
January, 2018
1
January, 2019
Available data
11
bam
11
bed narrowPeak
4
bed bed3
4
bigWig
4
txt
3
bigBed narrowPeak
3
fastq
Organism
28
Homo sapiens
Biosample type
16
tissue
8
primary cell
4
cell line
Organ
874
pancreas
609
connective tissue
485
epithelium
450
adipose tissue
356
heart
345
liver
332
kidney
252
brain
205
vasculature
201
blood vessel
159
bone element
127
artery
105
limb
90
musculature of body
59
eye
32
nerve
27
embryo
20
lung
20
vein
18
ureter
16
skeleton
12
blood
12
bodily fluid
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
8
T1D
Genome assembly (visualization)
16
hg19
11
GRCh38
Lab
20
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
control
BIOSAMPLE
ASSAY
28 results
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ATAC-seq
snATAC-seq
total RNA-seq
ChIP-seq
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
3
See all biosamples
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