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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
16
ATAC-seq
9
DNase-seq
Assay category
35
DNA binding
25
DNA accessibility
Target of assay
35
histone
35
histone modification
transcription factor
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
29
August, 2017
14
June, 2019
9
February, 2021
2
August, 2021
2
November, 2020
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
561
bam
530
bigWig
478
tsv
62
fastq
60
bed narrowPeak
22
bigBed narrowPeak
22
tagAlign
17
bed bed3+
10
bed bed3
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
60
Homo sapiens
Biosample type
28
in vitro differentiated cells
16
primary cell
16
tissue
Organ
201
pancreas
200
brain
174
heart
174
kidney
142
epithelium
124
vasculature
121
blood vessel
112
liver
92
limb
69
artery
60
musculature of body
52
connective tissue
32
eye
27
nerve
18
ureter
13
vein
11
embryo
8
adipose tissue
8
bone element
8
skeleton
8
spleen
3
blood
3
bodily fluid
1
pituitary gland
Project
60
AMP
Genome assembly (visualization)
59
hg19
56
GRCh38
Lab
58
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
25
1
1
osteoblast
1
primary cell
mesenchymal stem cell
6
cardiac fibroblast
2
3
osteoblast
2
1
brain pericyte
1
hepatic stellate cell
1
tissue
omental fat pad
1
2
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
distal epiphysis
1
distal epiphysis of femur
1
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