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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
70
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
70
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
transcription factor
14
narrow histone mark
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
45
August, 2017
18
October, 2018
12
July, 2019
7
January, 2019
7
November, 2018
4
December, 2018
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
443
bam
418
bigWig
402
tsv
45
fastq
16
bed narrowPeak
12
bigBed narrowPeak
8
tagAlign
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bed bed3+
3
bigBed broadPeak
1
bedpe bed3+
Organism
492
Homo sapiens
Biosample type
490
tissue
2
primary cell
1
in vitro differentiated cells
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
450
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
blood
16
bodily fluid
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
493
AMP
Genome assembly (visualization)
417
GRCh38
417
hg19
Lab
493
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
RNA binding protein
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
spleen
14
2
1
1
1
omental fat pad
5
8
1
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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