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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
24
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
24
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
18
October, 2018
13
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
424
bam
406
bigWig
401
tsv
26
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
441
Homo sapiens
Biosample type
439
tissue
2
primary cell
1
in vitro differentiated cells
Organ
776
pancreas
566
connective tissue
442
adipose tissue
422
epithelium
347
liver
314
kidney
279
heart
159
bone element
156
vasculature
152
blood vessel
116
artery
96
brain
73
limb
63
musculature of body
57
eye
22
embryo
20
lung
19
nerve
18
ureter
16
skeleton
15
blood
15
bodily fluid
13
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
442
AMP
Genome assembly (visualization)
407
hg19
406
GRCh38
Lab
442
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
442 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
2
subcutaneous abdominal adipose tissue
5
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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