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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
24
DNA binding
12
DNA accessibility
2
3D chromatin structure
Target of assay
transcription factor
16
histone
16
histone modification
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
21
October, 2019
8
January, 2021
4
January, 2019
3
November, 2018
1
January, 2018
1
March, 2020
Available data
27
bam
17
bigWig
14
bed narrowPeak
14
bigBed narrowPeak
7
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
38
Homo sapiens
Biosample type
30
primary cell
8
cell line
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
450
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
blood
16
bodily fluid
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
8
T1D
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
30
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
target.investigated_as!
transcription factor
RNA binding protein
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
cell line
GM12878
7
1
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