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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
31
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
7
January, 2019
6
November, 2018
4
December, 2018
2
March, 2020
1
October, 2017
Available data
38
bam
25
bigWig
21
bed narrowPeak
20
bigBed narrowPeak
18
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
41
Homo sapiens
Biosample type
22
primary cell
19
tissue
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
450
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
blood
16
bodily fluid
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
25
hg19
22
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
transcription factor
RNA binding protein
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
spleen
14
1
2
1
1
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