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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
237
ChIP-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
288
DNA accessibility
237
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
44
August, 2017
43
April, 2018
43
June, 2019
31
October, 2019
28
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
593
bigWig
567
bam
388
fastq
285
bed narrowPeak
267
tsv
153
zippedFastqFolder
99
bigBed narrowPeak
98
tagAlign
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1043
Homo sapiens
Biosample type
2461
tissue
1043
primary cell
308
in vitro differentiated cells
218
cell line
9
stem cell
Organ
380
epithelium
334
pancreas
35
connective tissue
31
kidney
31
vasculature
27
blood vessel
20
vein
13
liver
12
brain
12
musculature of body
10
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
514
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
608
hg19
524
GRCh38
Lab
482
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
control
BIOSAMPLE
ASSAY
1043 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
7
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
7
23
12
16
1
exocrine cell
39
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