Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
16
ChIP-seq
Assay category
206
DNA accessibility
16
DNA binding
Target of assay
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
9
November, 2018
9
October, 2019
8
August, 2017
8
November, 2017
1
November, 2020
Available data
2502
bam
2213
bigWig
1600
tsv
899
bed narrowPeak
794
fastq
488
bigBed narrowPeak
244
bed broadPeak
241
bed bed3+
222
bigBed broadPeak
215
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
222
Homo sapiens
Biosample type
176
tissue
36
primary cell
9
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
222
AMP
Genome assembly (visualization)
218
GRCh38
199
hg19
Lab
222
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
narrow histone mark
BIOSAMPLE
ASSAY
222 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
skeletal muscle myoblast
1
6
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
HepG2
8
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download