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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
98
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
57
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
135
bam
113
bigWig
94
bed narrowPeak
91
bigBed narrowPeak
64
tagAlign
36
bed broadPeak
35
bed bed3+
32
bigBed broadPeak
26
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
166
Homo sapiens
Biosample type
151
tissue
15
primary cell
Organ
854
pancreas
611
connective tissue
466
epithelium
462
adipose tissue
393
liver
329
kidney
316
heart
201
vasculature
197
blood vessel
166
brain
159
bone element
130
artery
107
limb
83
musculature of body
57
eye
35
nerve
26
embryo
20
lung
18
ureter
17
blood
17
bodily fluid
17
spleen
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
107
GRCh38
69
hg19
Lab
166
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
transcription factor
narrow histone mark
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
choroid plexus epithelial cell
1
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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