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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
660
histone modification
659
histone
349
narrow histone mark
309
broad histone mark
258
transcription factor
240
control
65
RNA binding protein
23
recombinant protein
20
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
59
bam
59
bigWig
58
bed narrowPeak
51
bigBed narrowPeak
50
fastq
2
bed bed3+
Organism
65
Homo sapiens
Biosample type
31
cell line
23
tissue
11
in vitro differentiated cells
primary cell
Organ
24
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
65
AMP
Genome assembly (visualization)
59
hg19
58
GRCh38
Lab
59
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
1
inconsistent control run_type
biosample_type!
primary cell
month_released!
November, 2017
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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