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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
Assay category
80
DNA binding
Target of assay
406
transcription factor
388
histone
388
histone modification
198
broad histone mark
189
narrow histone mark
153
control
89
recombinant protein
80
RNA binding protein
28
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
74
bam
73
bed narrowPeak
73
bigWig
68
fastq
67
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
80
Homo sapiens
Biosample type
59
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
56
liver
8
epithelium
5
connective tissue
4
blood
4
bodily fluid
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
80
AMP
Genome assembly (visualization)
72
hg19
67
GRCh38
Lab
74
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
month_released!
January, 2019
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
cell line
HepG2
54
GM12878
4
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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