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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
Assay category
62
DNA binding
Target of assay
353
transcription factor
89
recombinant protein
83
control
62
RNA binding protein
38
histone
38
histone modification
22
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
32
November, 2017
20
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
61
bam
60
bed narrowPeak
60
bigWig
60
fastq
58
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
62
Homo sapiens
Biosample type
62
cell line
23
tissue
11
in vitro differentiated cells
10
primary cell
Organ
51
liver
10
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
62
AMP
Genome assembly (visualization)
59
hg19
56
GRCh38
Lab
61
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
6
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
cell line
HepG2
51
GM12878
10
EndoC_BH1
1
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