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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
42
November, 2017
21
November, 2018
7
November, 2019
6
January, 2019
4
October, 2019
2
August, 2021
2
December, 2018
Available data
82
bam
81
bigWig
80
bed narrowPeak
71
bigBed narrowPeak
71
fastq
12
bed broadPeak
12
bigBed broadPeak
6
tagAlign
1
tar
Organism
84
Homo sapiens
Biosample type
306
tissue
132
primary cell
84
cell line
67
in vitro differentiated cells
1
stem cell
Organ
63
liver
11
pancreas
10
blood
10
bodily fluid
7
epithelium
Project
84
AMP
Genome assembly (visualization)
80
hg19
74
GRCh38
Lab
82
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
cell line
HepG2
63
GM12878
10
EndoC_BH1
7
Panc1
4
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