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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
Assay category
78
DNA binding
Target of assay
439
transcription factor
214
histone modification
213
histone
141
control
107
broad histone mark
105
narrow histone mark
82
recombinant protein
78
RNA binding protein
36
chromatin remodeller
5
other context
5
other post-translational modification
Date released
37
November, 2017
21
November, 2018
October, 2018
8
August, 2017
6
January, 2019
4
December, 2017
2
December, 2018
Available data
95
bigWig
94
bed narrowPeak
92
bam
82
bigBed narrowPeak
78
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
78
Homo sapiens
Biosample type
63
cell line
6
in vitro differentiated cells
5
primary cell
4
tissue
Organ
57
liver
10
blood
10
bodily fluid
4
connective tissue
4
epithelium
3
brain
2
pancreas
2
vasculature
1
blood vessel
Project
78
AMP
Genome assembly (visualization)
75
hg19
71
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
October, 2018
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
in vitro differentiated cells
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
tissue
islet of Langerhans
2
liver
1
right lobe of liver
1
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