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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
278
transcription factor
104
control
100
histone modification
99
histone
66
recombinant protein
58
narrow histone mark
41
broad histone mark
38
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
November, 2018
4
December, 2017
Available data
38
bam
38
fastq
36
bed narrowPeak
36
bigBed narrowPeak
36
bigWig
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
38
Homo sapiens
Biosample type
34
cell line
2
in vitro differentiated cells
2
tissue
Organ
38
liver
11
heart
10
connective tissue
9
pancreas
8
blood
8
bodily fluid
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
38
AMP
Genome assembly (visualization)
35
hg19
32
GRCh38
Lab
38
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2018
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
34
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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