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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
Assay category
68
DNA binding
Target of assay
378
transcription factor
181
histone modification
180
histone
143
control
93
narrow histone mark
86
broad histone mark
82
recombinant protein
68
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
5
October, 2018
4
August, 2017
4
December, 2017
1
August, 2021
1
June, 2019
Available data
67
bam
66
bed narrowPeak
66
bigWig
66
fastq
61
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
68
Homo sapiens
Biosample type
54
cell line
7
tissue
6
in vitro differentiated cells
1
primary cell
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
68
AMP
Genome assembly (visualization)
65
hg19
61
GRCh38
Lab
67
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
tissue
omental fat pad
3
subcutaneous adipose tissue
2
liver
1
right lobe of liver
1
in vitro differentiated cells
adipocyte
4
hepatocyte
2
primary cell
cardiac fibroblast
1
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