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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
5
MeRIP-seq
Assay category
38
DNA binding
Target of assay
197
histone
197
histone modification
103
broad histone mark
94
narrow histone mark
37
control
24
transcription factor
6
RNA binding protein
5
nucleotide modification
Date released
19
August, 2017
13
May, 2021
5
August, 2021
5
November, 2020
1
October, 2017
Available data
bam
257
fastq
124
bigWig
100
bed narrowPeak
93
bigBed narrowPeak
68
tagAlign
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
3
tsv
1
tar
Organism
43
Homo sapiens
Biosample type
20
tissue
12
in vitro differentiated cells
8
cell line
3
primary cell
Organ
11
pancreas
8
liver
7
connective tissue
5
adipose tissue
3
epithelium
3
musculature of body
1
brain
Project
43
AMP
Genome assembly (visualization)
4
hg19
Lab
20
AMP-T2D consortium
13
Kyle Gaulton, UCSD
5
Bing Ren, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
brain
1
in vitro differentiated cells
embryonic stem cell
10
adipocyte
2
cell line
HepG2
5
EndoC_BH1
3
primary cell
CD8-positive, alpha-beta T cell
3
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