Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
2
MeRIP-seq
Assay category
103
DNA binding
Target of assay
764
histone modification
763
histone
493
transcription factor
389
narrow histone mark
373
broad histone mark
298
control
103
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
2
November, 2020
1
August, 2021
Available data
95
bigWig
94
bed narrowPeak
92
bam
84
fastq
83
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
105
Homo sapiens
Biosample type
64
cell line
30
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
10
heart
10
pancreas
9
connective tissue
5
adipose tissue
3
blood vessel
3
vasculature
2
epithelium
1
artery
1
kidney
Project
105
AMP
Genome assembly (visualization)
90
GRCh38
89
hg19
Lab
92
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
105 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
54
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
islet of Langerhans
2
2
heart left ventricle
3
omental fat pad
3
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
Download