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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
5
MeRIP-seq
Assay category
83
DNA binding
Target of assay
780
histone modification
779
histone
440
transcription factor
399
narrow histone mark
379
broad histone mark
302
control
83
RNA binding protein
73
recombinant protein
28
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
34
November, 2017
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
5
November, 2020
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
75
bigWig
74
bed narrowPeak
72
bam
63
fastq
62
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
88
Homo sapiens
Biosample type
47
cell line
30
tissue
11
in vitro differentiated cells
primary cell
Organ
39
liver
14
pancreas
10
heart
9
connective tissue
8
blood
8
bodily fluid
6
epithelium
5
adipose tissue
3
blood vessel
3
vasculature
1
artery
1
kidney
Project
88
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
72
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
5
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2018
biosample_type!
primary cell
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
35
GM12878
8
EndoC_BH1
1
3
tissue
body of pancreas
5
left cardiac atrium
5
islet of Langerhans
2
2
heart left ventricle
3
omental fat pad
3
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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