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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
299
control
174
histone
174
histone modification
91
narrow histone mark
83
broad histone mark
65
transcription factor
13
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
60
August, 2017
10
May, 2021
5
November, 2017
5
October, 2017
2
August, 2021
1
October, 2019
Available data
45
tagAlign
14
bigWig
13
bed broadPeak
13
bed narrowPeak
2
bam
2
fastq
1
bigBed broadPeak
Organism
83
Homo sapiens
Biosample type
61
tissue
primary cell
19
in vitro differentiated cells
3
cell line
Organ
28
connective tissue
20
adipose tissue
14
liver
12
musculature of body
9
brain
9
pancreas
Project
83
AMP
Genome assembly (visualization)
GRCh38
253
hg19
Lab
72
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
20
liver
12
skeletal muscle tissue
12
islet of Langerhans
8
brain
5
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
10
adipocyte
8
neural progenitor cell
1
cell line
HepG2
2
Panc1
1
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