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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
Assay category
179
DNA binding
Target of assay
351
histone
351
histone modification
179
broad histone mark
171
narrow histone mark
73
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
76
May, 2021
36
August, 2017
17
September, 2018
12
December, 2017
12
October, 2019
8
August, 2021
8
February, 2018
8
June, 2019
2
May, 2019
Available data
156
bigWig
150
bed narrowPeak
138
bam
65
fastq
65
tagAlign
28
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
Organism
179
Homo sapiens
Biosample type
tissue
122
primary cell
56
in vitro differentiated cells
cell line
1
stem cell
Organ
38
epithelium
27
pancreas
24
connective tissue
9
blood vessel
9
vasculature
9
vein
8
liver
5
kidney
4
embryo
4
musculature of body
Project
135
AMP
44
T1D
Genome assembly (visualization)
155
hg19
134
GRCh38
Lab
105
AMP-T2D consortium
74
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
tissue
BIOSAMPLE
ASSAY
179 results
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Clear Filters
ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
+ See 11 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
stem cell
hESC
1
See all biosamples
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