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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
Assay category
347
DNA binding
Target of assay
720
histone modification
719
histone
442
transcription factor
372
narrow histone mark
347
broad histone mark
254
control
89
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
66
May, 2021
58
May, 2019
57
August, 2017
51
October, 2019
50
November, 2017
37
April, 2019
10
October, 2017
8
June, 2019
4
December, 2017
4
January, 2019
2
August, 2021
Available data
297
bigWig
295
bed narrowPeak
271
bam
205
bigBed narrowPeak
125
tagAlign
35
fastq
28
bed broadPeak
16
bigBed broadPeak
2
bed bed3+
Organism
347
Homo sapiens
Biosample type
242
tissue
95
primary cell
in vitro differentiated cells
9
cell line
1
stem cell
Organ
pancreas
70
brain
45
blood vessel
45
vasculature
37
epithelium
37
heart
35
liver
34
limb
24
connective tissue
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
spleen
Project
303
AMP
44
T1D
Genome assembly (visualization)
266
GRCh38
262
hg19
Lab
282
AMP-T2D consortium
64
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
pancreas
BIOSAMPLE
ASSAY
347 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
tibial artery
14
+ See 21 more…
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
endothelial cell of umbilical vein
9
skeletal muscle myoblast
6
mesenchymal stem cell
4
+ See 6 more…
cell line
HepG2
9
stem cell
hESC
1
See all biosamples
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