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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
Assay category
403
DNA binding
Target of assay
839
histone modification
838
histone
452
transcription factor
435
narrow histone mark
403
broad histone mark
285
control
101
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
83
August, 2017
66
May, 2021
54
May, 2019
50
November, 2017
37
April, 2019
25
October, 2019
20
May, 2024
19
October, 2018
17
September, 2018
10
October, 2017
8
June, 2019
6
November, 2019
4
January, 2019
3
December, 2017
1
August, 2021
Available data
356
bigWig
349
bed narrowPeak
307
bam
201
bigBed narrowPeak
133
tagAlign
87
fastq
36
bed broadPeak
16
bigBed broadPeak
bed bed3+
Organism
399
Homo sapiens
Biosample type
263
tissue
121
primary cell
in vitro differentiated cells
19
cell line
Organ
72
pancreas
70
brain
57
heart
45
blood vessel
45
vasculature
36
epithelium
limb
34
liver
24
connective tissue
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
spleen
Project
359
AMP
44
T1D
Genome assembly (visualization)
313
GRCh38
293
hg19
Lab
318
AMP-T2D consortium
64
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
limb
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
403 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
heart left ventricle
15
brain
13
+ See 23 more…
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
+ See 10 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
See all biosamples
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