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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
Assay category
358
DNA binding
Target of assay
744
histone modification
743
histone
499
transcription factor
384
narrow histone mark
358
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
92
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
288
bigWig
287
bed narrowPeak
277
bam
220
bigBed narrowPeak
95
tagAlign
84
fastq
27
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
355
Homo sapiens
Biosample type
282
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
50
pancreas
41
liver
40
connective tissue
37
heart
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
358
AMP
Genome assembly (visualization)
275
GRCh38
252
hg19
Lab
347
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
inconsistent assembly
biosample_type!
primary cell
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
358 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
islet of Langerhans
14
+ See 25 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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