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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
Assay category
14
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
August, 2017
10
November, 2017
2
October, 2017
2
October, 2019
Available data
366
bigWig
364
bed narrowPeak
329
bam
224
bigBed narrowPeak
102
tagAlign
69
fastq
14
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
Organism
14
Homo sapiens
Biosample type
8
cell line
4
tissue
2
primary cell
Organ
8
liver
4
brain
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
14
AMP
Genome assembly (visualization)
14
hg19
11
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
narrow histone mark
month_released!
August, 2017
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
cell line
HepG2
8
tissue
brain
2
cingulate gyrus
1
middle frontal area 46
1
primary cell
endothelial cell of umbilical vein
2
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