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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
293
control
75
histone
75
histone modification
47
narrow histone mark
28
broad histone mark
22
transcription factor
8
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
August, 2017
12
May, 2021
5
November, 2017
5
October, 2017
5
October, 2019
1
August, 2021
Available data
346
bigWig
bed narrowPeak
329
bam
224
bigBed narrowPeak
102
tagAlign
69
fastq
14
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
Organism
28
Homo sapiens
Biosample type
11
in vitro differentiated cells
9
tissue
6
primary cell
2
cell line
Organ
9
brain
4
blood vessel
4
epithelium
4
vasculature
4
vein
1
liver
1
pancreas
Project
28
AMP
Genome assembly (visualization)
3
hg19
Lab
18
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
10
neural progenitor cell
1
tissue
brain
5
cingulate gyrus
2
layer of hippocampus
2
primary cell
endothelial cell of umbilical vein
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
1
Panc1
1
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