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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
20
August, 2017
10
November, 2017
2
October, 2017
2
October, 2019
Available data
417
bigWig
410
bed narrowPeak
368
bam
232
bigBed narrowPeak
145
tagAlign
116
fastq
34
bed broadPeak
15
bigBed broadPeak
12
bed bed3+
Organism
31
Homo sapiens
Biosample type
19
tissue
8
cell line
7
primary cell
Organ
8
liver
8
musculature of body
7
pancreas
4
brain
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
34
AMP
Genome assembly (visualization)
34
hg19
19
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
month_released!
June, 2019
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
tissue
skeletal muscle tissue
8
islet of Langerhans
4
pancreas
3
brain
2
cingulate gyrus
1
+ See 1 more…
cell line
HepG2
8
primary cell
skeletal muscle myoblast
5
endothelial cell of umbilical vein
2
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