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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
501
broad histone mark
459
transcription factor
339
control
112
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
1
December, 2017
December, 2018
Available data
32
bam
32
bed narrowPeak
32
bigWig
32
fastq
30
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
28
cell line
3
in vitro differentiated cells
1
primary cell
Organ
21
liver
8
blood
8
bodily fluid
2
connective tissue
1
epithelium
Project
32
AMP
Genome assembly (visualization)
32
hg19
30
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
month_released!
December, 2018
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
20
GM12878
8
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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