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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
783
histone
783
histone modification
454
transcription factor
411
narrow histone mark
372
broad histone mark
293
control
98
RNA binding protein
89
recombinant protein
25
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
August, 2017
3
December, 2017
3
November, 2018
2
December, 2018
Available data
25
bam
25
bed narrowPeak
25
bigBed narrowPeak
25
bigWig
25
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
22
cell line
2
tissue
1
in vitro differentiated cells
Organ
15
liver
10
blood
10
bodily fluid
1
epithelium
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
25
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
11
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2017
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
cell line
HepG2
12
GM12878
10
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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