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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
981
histone modification
980
histone
501
transcription factor
498
narrow histone mark
481
broad histone mark
343
control
106
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
13
November, 2017
6
January, 2019
6
November, 2018
3
August, 2017
3
December, 2017
2
December, 2018
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
31
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
24
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
17
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
33
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
Lab
33
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
13
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
14
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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