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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
865
histone modification
864
histone
442
narrow histone mark
425
transcription factor
421
broad histone mark
343
control
97
RNA binding protein
88
recombinant protein
25
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
7
November, 2017
6
January, 2019
5
November, 2018
3
December, 2017
2
August, 2017
2
December, 2018
Available data
30
bam
30
bed narrowPeak
30
bigWig
30
fastq
28
bigBed narrowPeak
bed broadPeak
5
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
20
cell line
3
in vitro differentiated cells
2
tissue
Organ
13
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
25
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent control run_type
files.file_type!
bed broadPeak
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
cell line
GM12878
10
HepG2
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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