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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
Assay category
124
DNA binding
Target of assay
869
histone modification
868
histone
496
transcription factor
440
narrow histone mark
427
broad histone mark
106
RNA binding protein
88
recombinant protein
36
chromatin remodeller
23
control
5
other context
5
other post-translational modification
Date released
81
November, 2017
22
November, 2018
7
October, 2019
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
125
bam
124
bed narrowPeak
124
bigWig
118
fastq
115
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
124
Homo sapiens
Biosample type
118
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
104
liver
10
blood
10
bodily fluid
7
kidney
2
connective tissue
1
epithelium
Project
124
AMP
Genome assembly (visualization)
122
GRCh38
121
hg19
Lab
124
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
cell line
HepG2
101
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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