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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
951
histone modification
950
histone
483
narrow histone mark
467
transcription factor
466
broad histone mark
322
control
105
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
17
November, 2017
10
November, 2018
6
January, 2019
3
August, 2017
December, 2017
2
December, 2018
Available data
38
bam
38
bed narrowPeak
38
bigWig
38
fastq
36
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
32
cell line
3
tissue
2
in vitro differentiated cells
1
primary cell
Organ
22
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
Project
38
AMP
Genome assembly (visualization)
38
hg19
36
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
22
GM12878
10
tissue
spleen
3
in vitro differentiated cells
adipocyte
2
primary cell
skeletal muscle myoblast
1
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