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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
962
histone modification
961
histone
484
narrow histone mark
broad histone mark
428
transcription factor
337
control
101
RNA binding protein
88
recombinant protein
20
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
3
August, 2017
3
December, 2017
3
November, 2018
Available data
20
bam
20
bed narrowPeak
20
bigWig
20
fastq
18
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
20
Homo sapiens
Biosample type
14
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
17
liver
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent control run_type
organ_slims!
blood
target.investigated_as!
broad histone mark
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
cell line
HepG2
14
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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