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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
Assay category
121
DNA binding
Target of assay
745
histone modification
744
histone
499
transcription factor
384
narrow histone mark
359
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
43
November, 2017
26
November, 2018
11
October, 2018
8
August, 2017
8
January, 2019
6
December, 2017
5
May, 2021
4
April, 2019
4
December, 2018
4
May, 2019
1
August, 2021
1
November, 2019
Available data
115
bam
113
bigWig
112
bed narrowPeak
106
fastq
103
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
121
Homo sapiens
Biosample type
83
cell line
25
tissue
13
in vitro differentiated cells
primary cell
Organ
73
liver
15
blood
15
bodily fluid
11
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
121
AMP
Genome assembly (visualization)
112
hg19
107
GRCh38
Lab
115
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
3
inconsistent control
1
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
cell line
HepG2
67
GM12878
15
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
liver
3
omental fat pad
3
islet of Langerhans
2
+ See 8 more…
in vitro differentiated cells
adipocyte
6
embryonic stem cell
5
hepatocyte
2
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