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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
Assay category
68
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
30
November, 2017
10
November, 2019
7
January, 2019
7
November, 2018
7
October, 2019
3
August, 2021
2
December, 2018
1
March, 2020
1
May, 2021
Available data
67
bigWig
65
bam
65
bed narrowPeak
50
bigBed narrowPeak
46
fastq
18
bed broadPeak
18
bigBed broadPeak
11
tagAlign
Organism
68
Homo sapiens
Biosample type
595
tissue
238
primary cell
115
in vitro differentiated cells
68
cell line
2
stem cell
Organ
38
liver
19
pancreas
12
epithelium
11
blood
11
bodily fluid
Project
66
AMP
2
T1D
Genome assembly (visualization)
67
hg19
60
GRCh38
Lab
65
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
22
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
cell line
HepG2
38
EndoC_BH1
12
GM12878
11
Panc1
7
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