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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
Assay category
130
DNA binding
Target of assay
982
histone modification
981
histone
509
transcription factor
499
narrow histone mark
481
broad histone mark
343
control
109
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
83
November, 2017
26
November, 2018
7
October, 2019
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
130
bam
129
bed narrowPeak
129
bigWig
123
fastq
120
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
130
Homo sapiens
Biosample type
121
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
107
liver
10
blood
10
bodily fluid
7
kidney
3
spleen
2
connective tissue
1
epithelium
Project
130
AMP
Genome assembly (visualization)
127
GRCh38
126
hg19
Lab
130
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
cell line
HepG2
104
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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