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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
3
single cell RNA-seq
2
MeRIP-seq
Assay category
218
DNA binding
3
Transcription
Target of assay
832
histone modification
831
histone
425
narrow histone mark
406
broad histone mark
223
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
42
August, 2017
30
October, 2019
29
October, 2018
23
May, 2019
23
May, 2020
15
November, 2017
14
April, 2019
13
December, 2017
8
June, 2019
6
September, 2017
4
December, 2018
3
July, 2019
3
May, 2021
3
November, 2018
3
October, 2017
2
November, 2020
1
August, 2021
1
January, 2019
Available data
200
bam
84
fastq
54
tagAlign
10
bigWig
4
bed bed3+
3
tsv
Organism
222
Homo sapiens
Biosample type
187
tissue
cell line
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
47
liver
41
pancreas
31
brain
27
connective tissue
24
adipose tissue
21
epithelium
20
vasculature
19
blood vessel
18
heart
17
limb
11
nerve
9
kidney
8
spleen
7
artery
6
musculature of body
2
vein
1
eye
Project
223
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
218
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
biosample_type!
in vitro differentiated cells
cell line
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ChIP-seq
single cell RNA-seq
MeRIP-seq
tissue
liver
43
islet of Langerhans
13
2
tibial nerve
11
subcutaneous adipose tissue
10
body of pancreas
9
+ See 38 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
2
cerebellar granule cell
2
+ See 14 more…
stem cell
hESC
1
See all biosamples
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