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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
3
single cell RNA-seq
Assay category
56
DNA binding
3
Transcription
Target of assay
834
histone modification
833
histone
491
transcription factor
425
narrow histone mark
407
broad histone mark
101
RNA binding protein
88
recombinant protein
36
chromatin remodeller
23
control
5
other context
5
other post-translational modification
Date released
31
November, 2017
7
November, 2018
6
January, 2019
4
August, 2017
3
December, 2017
3
July, 2019
3
May, 2021
2
December, 2018
Available data
342
bam
204
fastq
68
tagAlign
59
bigWig
36
bed narrowPeak
34
bigBed narrowPeak
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
tsv
Organism
59
Homo sapiens
Biosample type
43
cell line
11
primary cell
3
in vitro differentiated cells
2
tissue
Organ
36
liver
10
blood
10
bodily fluid
6
brain
3
epithelium
2
connective tissue
2
vasculature
1
blood vessel
Project
59
AMP
Genome assembly (visualization)
59
hg19
37
GRCh38
Lab
56
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
33
GM12878
10
primary cell
CD8-positive, alpha-beta T cell
3
cerebellar granule cell
2
skeletal muscle myoblast
2
Purkinje cell
1
astrocyte of the cerebellum
1
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in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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